BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016G04SP1|AL427059
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig381 1808 0.0
>3x_Contig381
Length = 1399
Score = 1808 bits (905), Expect = 0.0
Identities = 946/963 (98%), Gaps = 3/963 (0%)
Strand = Plus / Plus
Query: 3 caaatctacgtgttggccaaataccgtttccatcaccgaaaacgaaatactaatatactt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caaatctacgtgttggccaaataccgtttccatcaccgaaaacgaaatactaatatactt 376
Query: 63 caaaaaatgattaaacatcaaaactggaagcacctttataataaacagacacaccaaaag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caaaaaatgattaaacatcaaaactggaagcacctttataataaacagacacaccaaaag 436
Query: 123 tacagaaagtacggacgagagtgaagtcattgactgcaaaccattgaacagcatacctca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tacagaaagtacggacgagagtgaagtcattgactgcaaaccattgaacagcatacctca 496
Query: 183 tcgggatcacatatataccagagtaatatgctgaattcagaattgtccttaagagacaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcgggatcacatatataccagagtaatatgctgaattcagaattgtccttaagagacaga 556
Query: 243 cagattctgtctattgaraagatgctactgttcaattcagataaaggaacggaagcagca 302
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagattctgtctattgaaaagatgctactgttcaattcagataaaggaacggaagcagca 616
Query: 303 acaagcaatcttgatgaacaagagatcgtttggraagtactgatcatggatgctaggagc 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 617 acaagcaatcttgatgaacaagagatcgtttggaaagtactgatcatggatgctaggagc 676
Query: 363 accgctataatatcatctgttatgagagtcaatgacttgttaaratccaatgttacagtt 422
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 677 accgctataatatcatctgttatgagagtcaatgacttgttaaaatccaatgttacagtt 736
Query: 423 cacgcccttatcacacaacagagatcccctttacctgatgttccagcagtgtatttcgtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cacgcccttatcacacaacagagatcccctttacctgatgttccagcagtgtatttcgtg 796
Query: 483 gaaccaacagaagcgaacatcgatgcgattgtccaggacttgaragargataagtattca 542
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 797 gaaccaacagaagcgaacatcgatgcgattgtccaggacttgaaagaagataagtattca 856
Query: 543 gaaacatacatcaatttcacaactacattgaraagagatcttttagaracctttgcragc 602
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct: 857 gaaacatacatcaatttcacaactacattgaaaagagatcttttagaaacctttgcaagc 916
Query: 603 gaggcttctgctactggcaagtctgacagartaavacaagtgtacgatcaatatttgggt 662
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct: 917 aaggcttctgctactggcaagtctgacagaataaaacaagtgtacgatcaatatttggat 976
Query: 663 ttcgttgtaacagaaccggaaatgttttcattggagatgcccggcacttatggacttatt 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 ttcgttgtaacagaaccggaaatgttttcattggagatgcccggcacttatggacttatt 1036
Query: 723 aataatcctcagagttctgaggacgttatcactaatctatgcgattcaattgctactggg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 aataatcctcagagttctgaggacgttatcactaatctatgcgattcaattgctactggg 1096
Query: 783 atcttcaatgctatcgtcacaattggaactatacctattattagagcacaaaggggtggt 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 atcttcaatgctatcgtcacaattggaactatacctattattagagcacaaaggggtggt 1156
Query: 843 gctgctgaaatggtggctc-aaaacttgaaacc-aactgcgtgattatgtcaatggtacc 900
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1157 gctgctgaaatggtggctcaaaaacttgaaaccaaactgcgtgattatgtcaatggtacc 1216
Query: 901 agatcttcagctagtggatc-acttcatttgagcggtttgttcttgttatagtggataga 959
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 agatcttcagctagtggttcaacttcatttgagcggtttgttcttgttatagtggataga 1276
Query: 960 rat 962
||
Sbjct: 1277 aat 1279
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.32
Gapped
Lambda K H
1.38 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6238
Number of Sequences: 1807
Number of extensions: 6238
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.4 bits)